What’s New (History)

Version 0.6

Released Nov 29 2017

Behavioural changes

  • Changed include_m1 default in count() function to True

New functionality in NGLess language

  • Added orf_find function (implemented through Prodigal) for open reading frame (ORF) predition
  • Add qcstats() function to retrieve the computed QC stats.
  • Added reference alias for a more human readable name
  • Updated builtin referenced to include latest releases of assemblies

New functionality in NGLess tools

  • Add –index-path functionality to define where to write indices.
  • Allow citations as key in external modules (generally better citations information)
  • Use multiple threads in SAM->BAM conversion
  • Better error checking/script validation

Bug fixes

  • Output preprocessed FQ statistics (had been erroneously removed)
  • Fix –strict-threads command-line option spelling
  • Version embedded megahit binary
  • Fixed inconsistency between reference identifiers and underlying files

Version 0.5.1

Released Nov 2 2017

Fixed some build issues

Version 0.5

Released Nov 1 2017

First release supporting all basic functionality.